rxs2tria

rxs2tria is an R package to handle Quantitative Wood Anatomy (QWA) data, specifically data generated with the ROXAS software or its successor ROXAS AI (under development). The package includes functionality to prepare, quality check and harmonize a QWA dataset, consisting of QWA images, corresponding ROXAS output files and accompanying metadata. The processed dataset may then be submitted to the TRIA database for intra-annual and anatomical tree-ring data.

Note: This package is currently under development and not yet stable nor officially released.

Installation

You can install the development version of rxs2tria from GitHub with:

pak::pak("tria-db/rxs2tria")
# or pak::pak("tria-db/rxs2tria@develop") for the develop branch

Getting started

The easiest way to get started is to follow the rxs2tria workflow defined in the template file. The following makes a copy of the template and saves it to your current working directory:

library(rxs2tria)
file.copy(system.file("templates/prepare_rxs_dataset.R", package = "rxs2tria"), ".")

See the vignette for a detailed introduction and example workflow. You can access it locally with:

vignette("rxs2tria")

Contributions

Contributions are welcome! Please feel free to open issues or submit pull requests on the GitHub repository.